Data sets available for blast at the NAGRP Blast Center
Nucleotide Sequence Databases
- Refseq Sequences, genomic
- Refseq genomics sequence 6448 in total (updated Apr. 4, 2007)
- Human Genome Sequences - by chromosomes
- Huamn genomics sequence in 368 fragments (updated Dec. 7, 2006)
- Cattle Genome Sequences - by chromosomes
- Cattle genomics sequence in 102,340 fragments (updated June 21, 2007)
- Cattle Genome Sequences - raw
- Cattle genomics sequence in 321,107 fragments (updated July 21, 2005)
- Cattle SNP Database (TMC Data)
- 130,915 cattle SNP data combined from 2004 data (3x genome coverage sequences) and
2005 data (6x genome coverage sequences) produced by the Texas Medical Center
(ftp://ftp.hgsc.bcm.tmc.edu/pub/data/Btaurus/snp)
- Chicken Genome Sequences - by chromosomes
- Chicken genomics sequence in 40,216 fragments (updated Nov. 16, 2006)
- Pig (Genome) Raw Trace Sequences
- 5.1 million Pig sequences including ~3.8 million fragments from
Sino-Danish project representing 0.66x coverage of the pig genome
(updated July 2, 2005)
- EST_other
- All non-human, non-mouse EST from Genback. Data source:
ftp://ftp.ncbi.nih.gov/blast/db/FASTA/est_others.gz
Data updated daily.
- Whole Genome Shortgun (WGS)
- Whole Genome Shotgun sequences for all species. Data source:
ftp://ftp.ncbi.nih.gov/blast/db/FASTA/wgs.gz
Data updated daily.
- TIGR Indices: Cattle
- Data source: http://www.tigr.org/ ; Data updated weekly.
- TIGR Indices: Chicken
- Data source: http://www.tigr.org/ ; Data updated weekly.
- TIGR Indices: Pig
- Data source: http://www.tigr.org/ ; Data updated weekly.
- TIGR Indices: Altlanta Salmon
- Data source: http://www.tigr.org/ ; Data updated weekly.
- TIGR Indices: Catfish
- Data source: http://www.tigr.org/ ; Data updated weekly.
- TIGR Indices: Rainbow Trout
- Data source: http://www.tigr.org/ ; Data updated weekly.
- UniGene: Huamn
- Data source: ftp://ftp.ncbi.nih.gov/repository/UniGene/Hs.seq.uniq.gz ; Data updated daily.
- UniGene: Cattle
- Data source: ftp://ftp.ncbi.nih.gov/repository/UniGene/Bt.seq.uniq.gz ; Data updated daily.
- UniGene: Chicken
- Data source: ftp://ftp.ncbi.nih.gov/repository/UniGene/Gga.seq.uniq.gz ; Data updated daily.
- UniGene: Pigs
- Data source: ftp://ftp.ncbi.nih.gov/repository/UniGene/Ssc.seq.uniq.gz ; Data updated daily.
Protein Sequence Databases
- Gene Ontology protein sequences
- Annotated known gene sequences from Gene Ontology. Data source:
http://www.geneontology.org/
Data updated occasionally or upon requests.
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