Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of milk composition - other traits:
29
Number of QTL / associations found:
2,699
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are milk composition - other traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
2382.19079
29
9e-41
1.227273e-40
Chromosome 1
2498.10495
29
9e-41
1.227273e-40
Chromosome 2
21963.84165
29
9e-41
1.227273e-40
Chromosome 3
155.54092
29
2.942288e-19
3.530746e-19
Chromosome 4
1533.18592
29
4.557967e-305
1.367390e-303
Chromosome 5
5.24378
29
0.9999997
9.999997e-01
Chromosome 6
71215.36148
29
9e-41
1.227273e-40
Chromosome 7
170.02468
29
6.88876e-22
8.985339e-22
Chromosome 8
416.98143
29
2.671507e-70
5.724658e-70
Chromosome 9
371.89658
29
3.544454e-61
7.088908e-61
Chromosome 10
104.05229
29
2.175887e-10
2.510639e-10
Chromosome 11
156.48632
29
1.987884e-19
2.484855e-19
Chromosome 12
72.20478
29
1.504966e-05
1.612464e-05
Chromosome 13
92.79188
29
1.345444e-08
1.494938e-08
Chromosome 14
21295.86406
29
9e-41
1.227273e-40
Chromosome 15
804.77987
29
1.143726e-150
3.812420e-150
Chromosome 16
870.49474
29
1.768441e-164
7.579033e-164
Chromosome 17
681.08675
29
8.755165e-125
2.387772e-124
Chromosome 18
1402.70216
29
2.966102e-277
2.966102e-276
Chromosome 19
837.31497
29
1.679543e-157
6.298286e-157
Chromosome 20
651.77500
29
1.122323e-118
2.805808e-118
Chromosome 21
1278.02043
29
1.003543e-250
7.526573e-250
Chromosome 22
1623.39854
29
9e-41
1.227273e-40
Chromosome 23
1623.39854
29
9e-41
1.227273e-40
Chromosome 24
623.10821
29
1.028439e-112
2.373321e-112
Chromosome 25
2.96583
29
0.998329325823115
9.999997e-01
Chromosome 26
1445.55198
29
2.206152e-286
3.309228e-285
Chromosome 27
973.90178
29
2.816319e-186
1.408160e-185
Chromosome 28
741.64397
29
1.951572e-137
5.854716e-137
Chromosome 29
1046.06335
29
1.578426e-201
9.470556e-201
Chi-squared (χ2) test: Which of the 29 milk composition - other traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Milk acetone content
70.10817
28
1.797337e-05
2.606139e-05
Milk acidity/alkalinity
65.67761
28
7.30479e-05
9.629041e-05
Milk beta-hydroxybutyrate content
96.75605
28
1.688762e-09
2.720783e-09
Milk calcium content
299.36748
28
3.275879e-47
1.055561e-46
Milk cholesterol content
127.62965
28
1.127518e-14
2.335573e-14
Milk citrate content
63.98919
28
0.0001229624
1.550395e-04
Milk copper content
66.17459
28
6.257395e-05
8.641165e-05
Milk energy yield
105.01052
28
7.687301e-11
1.311363e-10
Milk glycerophosphocholine content
899.05091
28
3.004804e-171
2.178483e-170
Milk glycerophosphocholine to phosphocholine ratio
727.54624
28
3.369904e-135
1.954544e-134
Milk iodine content
94.71403
28
3.579086e-09
5.462815e-09
Milk iron content
376.4648
28
1.146443e-62
4.155856e-62
Milk lactose content
194.94736
28
6.171208e-27
1.789650e-26
Milk lactose yield
60.58945
28
0.0003422662
3.970288e-04
Milk magnesium content
151.556
28
6.459076e-19
1.440871e-18
Milk manganese content
189.78571
28
5.77406e-26
1.522252e-25
Milk mid-infrared spectra
115.39878
28
1.414555e-12
2.734806e-12
Milk phosphocholine level
61.82129
28
0.0002371393
2.865433e-04
Milk phosphorus content
1253.80199
28
2.083287e-246
6.041532e-245
Milk potassium content
1203.77263
28
8.973652e-236
8.674530e-235
Milk riboflavin content
548.34503
28
7.070247e-98
3.417286e-97
Milk selenium content
422.7756
28
4.514676e-72
1.870366e-71
Milk sodium content
55.97539
28
0.001295274
1.444729e-03
Milk solids percentage
110.42208
28
9.72358e-12
1.762399e-11
Milk solids yield
28.28939
28
0.4491939
4.652365e-01
Milk vitamin B-12 content
163.21493
28
4.906101e-21
1.185641e-20
Milk zinc content
1224.11281
28
4.271666e-240
6.193916e-239
Non-fat milk solids
32.9715
28
0.2367955
2.543359e-01
Non-fat milk solids percentage
6.77809
28
0.9999869
9.999869e-01
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
137039.977630
Number of traits:
29
df
=
812
Number of QTLs:
2,699
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
