Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of fatness traits:
19
Number of QTL / associations found:
3,837
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are fatness traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
1794.23137
29
9e-41
1.687500e-40
Chromosome 1
1205.95926
29
2.040371e-235
3.060557e-234
Chromosome 2
1287.60435
29
9.207618e-253
2.762285e-251
Chromosome 3
1.42766
29
0.998329325823115
9.983293e-01
Chromosome 4
21.74968
29
0.8304052
8.897199e-01
Chromosome 5
193.59651
29
2.959416e-26
4.439124e-26
Chromosome 6
8071.74815
29
9e-41
1.687500e-40
Chromosome 7
2178.56907
29
9e-41
1.687500e-40
Chromosome 8
180.93966
29
6.729905e-24
9.614150e-24
Chromosome 9
248.50195
29
9.943766e-37
1.657294e-36
Chromosome 10
160.79586
29
3.307724e-20
4.510533e-20
Chromosome 11
1768.20479
29
9e-41
1.687500e-40
Chromosome 12
3482.03747
29
9e-41
1.687500e-40
Chromosome 13
3.56668
29
0.998329325823115
9.983293e-01
Chromosome 14
554.58169
29
1.628810e-98
5.429367e-98
Chromosome 15
24.72071
29
0.6926559
7.696177e-01
Chromosome 16
47.59804
29
0.01617231
1.940677e-02
Chromosome 17
29.53398
29
0.4375299
5.048422e-01
Chromosome 18
151.16951
29
1.792004e-18
2.337397e-18
Chromosome 19
132.80829
29
3.118324e-15
3.897905e-15
Chromosome 20
248.50195
29
9.943766e-37
1.657294e-36
Chromosome 21
767.96404
29
6.01116e-143
4.508370e-142
Chromosome 22
213.38387
29
5.478794e-30
8.650727e-30
Chromosome 23
746.75054
29
1.665814e-138
8.329070e-138
Chromosome 24
684.89281
29
1.407221e-125
6.030947e-125
Chromosome 25
746.75054
29
1.665814e-138
8.329070e-138
Chromosome 26
415.71373
29
4.833625e-70
1.450088e-69
Chromosome 27
645.13987
29
2.698474e-117
1.011928e-116
Chromosome 28
1045.69977
29
1.884259e-201
1.884259e-200
Chromosome 29
326.75991
29
3.952765e-52
1.078027e-51
Chi-squared (χ2) test: Which of the 19 fatness traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Channel fat weight
16.36201
18
0.5672985
5.672985e-01
Fat area to ribeye area ratio
22.09777
18
0.2276734
2.883863e-01
Fat cover
75.51877
18
5.149594e-09
1.630705e-08
Fat percentage
45.80381
18
0.0003168623
7.525480e-04
Fat trim yield
43.56435
18
0.000665592
1.405139e-03
Fat weight
57.75991
18
4.684557e-06
1.271523e-05
Intermuscular fat percentage
27.02373
18
0.07855148
1.250138e-01
Internal fat weight
27.0021
18
0.07895611
1.250138e-01
Intramuscular fat
151.61295
18
3.609939e-23
2.286295e-22
Kidney fat weight
92.14424
18
5.93876e-12
2.256729e-11
Kidney, pelvic, and heart fat percentage
94.80524
18
1.960518e-12
9.312460e-12
Kidney, pelvic, and heart fat weight
25.04945
18
0.1235601
1.676887e-01
Marbling score
200.04291
18
9.823407e-33
9.332237e-32
Meat fat content
20.38456
18
0.3115904
3.637133e-01
Pericardial fat weight
26.40716
18
0.09080626
1.327168e-01
Rib fat
33.16356
18
0.01594564
3.029672e-02
Sirloin fat depth
19.84895
18
0.3413876
3.637133e-01
Subcutaneous fat percentage
19.7934
18
0.3445705
3.637133e-01
Subcutaneous fat thickness
437.71193
18
1.21312e-81
2.304928e-80
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
27380.901710
Number of traits:
19
df
=
522
Number of QTLs:
3,837
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
