Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of limb traits traits:
20
Number of QTL / associations found:
3,166
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are limb traits traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
2659.70020
29
9e-41
1.687500e-40
Chromosome 1
1079.32120
29
1.443852e-208
2.165778e-207
Chromosome 2
310.33820
29
7.287219e-49
1.821805e-48
Chromosome 3
0.04120
29
0.998329325823115
9.983293e-01
Chromosome 4
143.66720
29
3.879506e-17
5.819259e-17
Chromosome 5
716.01100
29
4.475842e-132
1.918218e-131
Chromosome 6
463.73040
29
7.85898e-80
2.357694e-79
Chromosome 7
225.13280
29
3.151252e-32
5.252087e-32
Chromosome 8
143.66720
29
3.879506e-17
5.819259e-17
Chromosome 9
25.20860
29
0.667379
7.312453e-01
Chromosome 10
104.95600
29
1.551931e-10
2.116270e-10
Chromosome 11
2108.00080
29
9e-41
1.687500e-40
Chromosome 12
296.18780
29
4.609079e-46
1.063634e-45
Chromosome 13
1989.78220
29
9e-41
1.687500e-40
Chromosome 14
24.91800
29
0.6824956
7.312453e-01
Chromosome 15
717.56500
29
2.11886e-132
1.059430e-131
Chromosome 16
40.02860
29
0.08347037
1.043380e-01
Chromosome 17
358.05760
29
2.155807e-58
5.879474e-58
Chromosome 18
0.05400
29
0.998329325823115
9.983293e-01
Chromosome 19
133.42100
29
2.439907e-15
3.485581e-15
Chromosome 20
29.45380
29
0.4416275
5.095702e-01
Chromosome 21
45.72660
29
0.02497548
3.257671e-02
Chromosome 22
266.97740
29
2.526573e-40
4.458658e-40
Chromosome 23
543.11140
29
3.806660e-96
1.268887e-95
Chromosome 24
717.56500
29
2.11886e-132
1.059430e-131
Chromosome 25
1139.24540
29
2.906453e-221
8.719359e-220
Chromosome 26
34.36840
29
0.2260303
2.712364e-01
Chromosome 27
543.11140
29
3.806660e-96
1.268887e-95
Chromosome 28
864.32420
29
3.514771e-163
2.636078e-162
Chromosome 29
916.27620
29
4.037341e-174
4.037341e-173
Chi-squared (χ2) test: Which of the 20 limb traits traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Digital cushion thickness
331.7533
19
5.955878e-59
1.191176e-57
Digital dermatitis
140.93008
19
1.211952e-20
6.059760e-20
Feet and leg conformation
43.86502
19
0.0009858442
1.159817e-03
Foot angle
39.97973
19
0.003292424
3.465709e-03
Foot diagonal
70.95454
19
6.378402e-08
8.504536e-08
Front leg conformation
52.0532
19
6.495936e-05
8.119920e-05
Heel depth
129.3845
19
1.906326e-18
6.354420e-18
Heel horn erosion
97.85835
19
1.305529e-12
2.611058e-12
Hind leg conformation
41.36988
19
0.002154048
2.393387e-03
Hoof and leg disorders
161.80576
19
1.129618e-24
7.530787e-24
Hoof trimming status
70.95454
19
6.378402e-08
8.504536e-08
Interdigital dermatitis
118.69826
19
1.941671e-16
4.854178e-16
Interdigital hyperplasia
107.5152
19
2.283145e-14
5.073656e-14
Laminitis
28.00192
19
0.08339168
8.339168e-02
Rear leg placement - rear view
78.97775
19
2.788304e-09
4.289698e-09
Rear leg placement - side view
83.48482
19
4.629967e-10
7.716612e-10
Sole hemorrhage
123.98975
19
1.982379e-17
5.663940e-17
Sole ulcer
166.95884
19
1.117276e-25
1.117276e-24
Toe ulcer
135.8633
19
1.123849e-19
4.495396e-19
White line disease
85.00397
19
2.514315e-10
4.571482e-10
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
16639.948800
Number of traits:
20
df
=
551
Number of QTLs:
3,166
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
