| QTL Map Information |
|---|
| Chromosome: | 16 |
| QTL Peak Location: | 101.10 (cM) |
| QTL Span: | 101.10-101.10 (cM)
79.7-79.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs42217947 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Map view
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Irish cattle of various pure and crossbreeds. The majority of the sires were purebred Charolais, Limousin, Holstein-Friesian, Aberdeen Angus, and Simmental. |
| Breeds associated:
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| Design: | Sires were genotyped using a BovineHD, BovineSNP50, or custom-built genotyping panel. Data were imputed to HD, then to WGS, and SNP association with bovine tuberculosis infection was analyzed. |
| Analysis: | Mixed models were used for within-breed and across-breed single-SNP regression analysis. |
| Software: | WOMBAT, FImpute2, SAMtools, Beagle, Eagle, minimac3 |
| Notes: | |
| Reference |
|---|
| Authors: | Ring S C, Purfield D C, Good M, Breslin P, Ryan E, Blom A, Evans R D, Doherty M L, Bradley D G, Berry D P |
| Affiliation: | Teagasc, Animal and Grassland Research and Innovation Centre, Moorepark, Fermoy, Co. Cork, Ireland |
| Title: | Variance components for bovine tuberculosis infection and multi-breed genome-wide association analysis using imputed whole genome sequence data |
| Journal: | PloS one, 2019, 14(2): e0212067 |
| Links: |
PubMed | Abstract | List all data
|
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