| QTL Map Information |
|---|
| Chromosome: | 10 |
| QTL Peak Location: | 51.70 (cM) |
| QTL Span: | 51.65-51.74 (cM)
46.4-46.5 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs109394729 |
| Peak: | |
| Lower, "Significant": | rs110382174 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
VARIANCE | 1.17% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Portuguese Holstein cattle. |
| Breeds associated:
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| Design: | Animals were genotyped using either the GeneSeek Genomic Profiler, Illumina Bovine SNP50 v1 or v2, or Affymetrix Ax58K panel, with all data imputed to SNP50 v2, and analyzed for milk production traits in the first three lactations. A total of 38,323 autosomal SNPs were used for analysis. |
| Analysis: | The AR model for multiple lactations was used in GEBV prediction simultaneously in the weighted single-step GWAS for milk, fat, and protein yield, and somatic cell score. |
| Software: | FImpute 2.2 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Silva AA, Silva DA, Silva FF, Costa CN, Silva HT, Lopes PS, Veroneze R, Thompson G, Carvalheira J |
| Affiliation: | Institute of Biomedical Sciences Abel Salazar (ICBAS), University of Porto, Porto, Portugal |
| Title: | GWAS and gene networks for milk-related traits from test-day multiple lactations in Portuguese Holstein cattle |
| Journal: | Journal of applied genetics, 2020, 61(3): 465-476 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
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| Comments: | First 3 lactations |
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