| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | 121.68 (cM) |
| QTL Span: | 121.68-121.68 (cM)
125.7-125.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs43268477 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 4.11E-6 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Holstein cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina BovineHD BeadChip and analyzed for digital dermatitis incidence. |
| Analysis: | Linear mixed model and random forest methods were used in GWAS to identify the top SNPs, which were used as predictors in Bayesian regression models to assess the SNP predictive value. |
| Software: | PLINK, GCTA, Beagle 5.1 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Lai E, Danner AL, Famula TR, Oberbauer AM |
| Affiliation: | Department of Animal Science, University of California, Davis, CA 95616, USA |
| Title: | Genome-Wide Association Studies Reveal Susceptibility Loci for Digital Dermatitis in Holstein Cattle |
| Journal: | Animals : an open access journal from MDPI, 2020, 10(11) |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Linear mixed model analysis using binary phenotypes |
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