| QTL Map Information |
|---|
| Chromosome: | 27 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
3.4-3.4 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs110137238 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | <0.01 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Calombian Creole Blanco Orejinegro cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped using either the Geneseek GGP Bovine 50K chip (with data imputed to 150K) or the GGP Bovine 150K chip, and GWAS were performed for reproduction traits. A total of 118,116 SNPs were used for analysis. |
| Analysis: | Bayes C(pi) methodology was used. |
| Software: | R software, PLINK, FImpute, GS3 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Rios ACH, Nasner SLC, Londoño-Gil M, Gonzalez-Herrera LG, Lopez-Herrera A, Flórez JCR |
| Affiliation: | Grupo de Investigación Biodiversidad y Genética Molecular (BIOGEM), Universidad Nacional de Colombia Sede Medellín, Carrera 65 N 59A-110, 050034, Medellín, Colombia |
| Title: | Genome-wide association study for reproduction traits in Colombian Creole Blanco Orejinegro cattle |
| Journal: | Tropical animal health and production, 2023, 55(6): 429 |
| Links: |
PubMed | Abstract | List all data
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