| QTL Map Information |
|---|
| Chromosome: | 4 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
2.5-2.5 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs385956452 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 3.05E-07 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Qinchuan cattle. |
| Breeds associated:
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| Design: | Animals were subjected to 10x genome resequencing, and GWAS were performed for growth and conformation traits. A total of 281,889 SNPs were used for GWAS. |
| Analysis: | A mixed linear model was used for GWAS. |
| Software: | FastQC v0.12.0, GATK v4.0, BCFtools v1.18, Beagle 5.4, PLINK v1.9, GCTA v1.94.1, ggplot2 and CMplot in R, GEMMA v0.94.1 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Yu H, Yu S, Guo J, Cheng G, Mei C, Zan L |
| Affiliation: | College of Animal Science and Technology, Northwest A&F University, Xianyang 712100, China. |
| Title: | Genome-Wide Association Study Reveals Novel Loci Associated with Body Conformation Traits in Qinchuan Cattle. |
| Journal: | Animals : an open access journal from MDPI, 2023, 13(23):3628 |
| Links: |
PubMed | Abstract | List all data
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