| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
60.3-70.3 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs14833013 |
| Peak: | |
| Lower, "Significant": | rs314821358 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were from a reciprocal cross between White Leghorn and Dongxiang chickens. |
| Breeds associated:
n/a
|
| Design: | Birds were genotyped using the Affymetrix Axiom Chicken Genotyping Array and analyzed for eggshell quality traits at 11 time points. A total of 435,867 SNPs were used for analysis. |
| Analysis: | A univariate linear mixed model and a multivariate linear mixed model were used. |
| Software: | PLINK, Haploview, GCTA, GenABEL in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Sun C, Qu L, Yi G, Yuan J, Duan Z, Shen M, Qu L, Xu G, Wang K, Yang N |
| Affiliation: | National Engineering Laboratory for Animal Breeding and MOA Key Laboratory of Animal Genetics and Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, China |
| Title: | Genome-wide association study revealed a promising region and candidate genes for eggshell quality in an F2 resource population |
| Journal: | BMC genomics, 2015, 16: 565 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | 72 weeks; univariate model |
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