| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
50.1-50.1 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs399518558 |
| Peak: | rs416074264 |
| Lower, "Significant": | rs426806849 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | 0.0002 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were indigenous Tunisian sheep. |
| Breeds associated:
n/a
|
| Design: | Animals were genotyped using the Illumina OvineSNP60 BeadChip, and susceptibility to gastrointestinal nematodes was analyzed by comparing infected vs. non-infected cohorts. |
| Analysis: | Four methods were used: runs of homozygosity, LR-GWAS, F(ST), and cross-population extended haplotype homozygosity. |
| Software: | PLINK 1.9, HIERFSTAT in R |
| Notes: | |
| Reference |
|---|
| Authors: | Ahbara A M, Rouatbi M, Gharbi M, Rekik M, Haile A, Rischkowsky B, Mwacharo J M |
| Affiliation: | Small Ruminant Genomics, International Centre for Agricultural Research in the Dry Areas (ICARDA), Addis Ababa, Ethiopia |
| Title: | Genome-wide insights on gastrointestinal nematode resistance in autochthonous Tunisian sheep |
| Journal: | Scientific reports, 2021, 11(1): 9250 |
| Links: |
PubMed | Abstract | List all data
|
| Additional Information |
|---|
| Comments: | Significant in ROH, LR-GWAS, F(ST), and XP-EHH |
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