Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of growth traits:
35
Number of QTL / associations found:
4,512
Number of chromosomes where QTL / associations are found:
19
Chi-squared (χ2) test: are growth traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
6162.08110
18
9e-41
1.315385e-40
Chromosome 1
12871.96575
18
9e-41
1.315385e-40
Chromosome 2
185.46640
18
7.898678e-30
1.000499e-29
Chromosome 3
7429.96975
18
9e-41
1.315385e-40
Chromosome 4
2828.24570
18
9e-41
1.315385e-40
Chromosome 5
10.58260
18
0.911223
9.112230e-01
Chromosome 6
218.75980
18
1.720075e-36
2.334387e-36
Chromosome 7
11351.69980
18
9e-41
1.315385e-40
Chromosome 8
81.21120
18
5.255782e-10
5.874109e-10
Chromosome 9
1233.23235
18
8.457823e-251
1.606986e-249
Chromosome 10
2432.65715
18
9e-41
1.315385e-40
Chromosome 11
55.89185
18
9.269623e-06
9.784602e-06
Chromosome 12
1002.49765
18
2.052489e-201
1.949865e-200
Chromosome 13
539.93450
18
4.099161e-103
1.557681e-102
Chromosome 14
128.03280
18
1.258209e-18
1.494123e-18
Chromosome 15
752.91300
18
3.284887e-148
1.560321e-147
Chromosome 16
2068.69425
18
9e-41
1.315385e-40
Chromosome 17
978.33435
18
2.98318e-196
1.889347e-195
Chromosome 18
2908.32220
18
9e-41
1.315385e-40
Chi-squared (χ2) test: Which of the 35 growth traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Age at slaughter
46.75971
34
0.07129445
1.313319e-01
Average daily gain
188.36301
34
2.754749e-23
1.377375e-22
Average daily ham weight gain
10.99999
34
0.9999368
9.999992e-01
Average daily lean meat gain
40.39448
34
0.2085913
3.476522e-01
Average daily loin weight gain
10.99999
34
0.9999368
9.999992e-01
Body circumference
711.9146
34
8.538262e-128
1.494196e-126
Body depth
38.34889
34
0.2787466
4.434605e-01
Body height
423.47817
34
9.311611e-69
1.086355e-67
Body length
1284.72005
34
4.37884e-248
1.532594e-246
Body mass index
90.62051
34
4.812853e-07
1.403749e-06
Body weight
109.74741
34
6.657176e-10
2.330012e-09
Body weight linear
7.76116
34
0.9999992
9.999992e-01
Body width
26.27354
34
0.8255074
9.999992e-01
Bone mineral content
45.66863
34
0.08718715
1.525775e-01
Bone mineral density
49.93451
34
0.0382567
7.438803e-02
Chest width
54.07856
34
0.01573000
3.238529e-02
Days to 100 kg
131.25184
34
2.345868e-13
9.122820e-13
Days to 105 kg
67.10677
34
0.0006052032
1.513008e-03
Days to 110 kg
69.68627
34
0.0002962405
7.975706e-04
Days to 113 kg
15.34782
34
0.9975326
9.999992e-01
Days to 115 kg
27.66881
34
0.7700778
9.999992e-01
Days to 30 kg
23.30361
34
0.9165184
9.999992e-01
Days to 90 kg
29.6069
34
0.6828669
9.958476e-01
Femur bone mineral density
14.34866
34
0.9987593
9.999992e-01
Femur length
193.75626
34
2.902142e-24
1.692916e-23
Hip bone length
93.13396
34
2.093731e-07
6.661871e-07
Humerus length
227.4769
34
1.750039e-30
1.225027e-29
Lipid accretion rate
66.35693
34
0.0007420343
1.731413e-03
Loin eye area linear
27.25776
34
0.7871458
9.999992e-01
Physis score
8.18522
34
0.9999985
9.999992e-01
Protein accretion rate
19.26015
34
0.9801317
9.999992e-01
Rump width
35.93721
34
0.3778304
5.749593e-01
Scapula length
64.95575
34
0.001080798
2.364246e-03
Tibia length
261.06466
34
7.900781e-37
6.913183e-36
Ulna length
172.14451
34
2.210227e-20
9.669743e-20
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
19
χ2
=
53240.492200
Number of traits:
35
df
=
612
Number of QTLs:
4,512
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
