| QTL Map Information |
|---|
| Chromosome: | 2 |
| QTL Peak Location: | 118.76 (cM) |
| QTL Span: | 118.76-118.76 (cM)
145.0-145.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81366836 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SIG of SEL |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | - |
| Threshold significance level: | Significant |
 |
Fst | 0.2836 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Erhualian pigs. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip, and a selective genomic scan was performed to detect SNPs associated with litter size. A total of 27,742 SNPs were used for analysis. |
| Analysis: | F(ST) was used to estimate genetic variability between groups of pigs with extreme litter size values. SNPs with the highest F(ST) values were used in association tests to confirm association with litter size. |
| Software: | SAS, DMU, PLINK, GENEPOP, R software, ASReml |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | He L C, Li P H, Ma X, Sui S P, Gao S, Kim S W, Gu Y Q, Huang Y, Ding N S, Huang R H |
| Affiliation: | Institute of Swine Science, Nanjing Agricultural University, Nanjing, 210095, China |
| Title: | Identification of new single nucleotide polymorphisms affecting total number born and candidate genes related to ovulation rate in Chinese Erhualian pigs |
| Journal: | Animal genetics, 2017, 48(1):48-54 |
| Links: |
PubMed | Abstract | List all data
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