| QTL Map Information |
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| Chromosome: | 5 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
61.5-61.5 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs698080978 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
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FDR | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| (none) |
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| QTL Experiment in Brief |
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| Animals: | Animals were Yorkshire pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina Porcine 80K SNP chip, with data imputed to whole-genome sequence, and association analysis was performed for body size traits. A total of 784,267 SNPs were used for analysis. |
| Analysis: | Single-step GWAS was performed, using a two-trait model for traits with high genetic correlation, and a single-trait model for the rest of the traits. |
| Software: | DMU v6.0, BedTools, bioconductor in R, BLUPF90, Beagle 4.1 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Liu H, Song H, Jiang Y, Jiang Y, Zhang F, Liu Y, Shi Y, Ding X, Wang C |
| Affiliation: | National Engineering Laboratory for Animal Breeding, Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture, College of Animal Science and Technology, China Agricultural University, Beijing, China |
| Title: | A Single-Step Genome Wide Association Study on Body Size Traits Using Imputation-Based Whole-Genome Sequence Data in Yorkshire Pigs |
| Journal: | Frontiers in genetics, 2021, 12:629049 |
| Links: |
PubMed | Abstract | List all data
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