| QTL Map Information |
|---|
| Chromosome: | 7 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
116.1-116.1 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs322268209 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | GSC (goosecoid homeobox) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were from Canadian and French lines of Large White pigs. |
| Breeds associated:
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| Design: | Pigs were genotyped using a GeneSeek Porcine 50K array, with data imputed to whole-genome sequence, and GWAS were performed for reproductive traits. A total of 14,561,445 SNPs were used for analysis. |
| Analysis: | Single-SNP regression models were used. |
| Software: | DMU, Beagle v5.2.2, PLINK v1.90, GATK v4.1.8.1, VCFtools v0.1.16, BCFtools v1.8, GCTA v1.93.3beta, METAL |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Wang X, Wang L, Shi L, Zhang P, Li Y, Li M, Tian J, Wang L, Zhao F |
| Affiliation: | Key Laboratory of Animal Genetics, Breeding and Reproduction (Poultry) of Ministry of Agriculture and Rural Affairs, Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100193, China |
| Title: | GWAS of Reproductive Traits in Large White Pigs on Chip and Imputed Whole-Genome Sequencing Data |
| Journal: | International journal of molecular sciences, 2022, 23(21):13338 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | combined LW |
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