| QTL Map Information |
|---|
| Chromosome: | 16 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
0.6-0.6 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs340245132 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 1.74% | | P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | CTNND2 (catenin delta 2) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Yorkshire and Landrace pigs. |
| Breeds associated:
|
| Design: | Animals were genotyped using the GeneSeek GGP Porcine 50K SNP BeadChip, and GWAS were performed for litter traits.
|
| Analysis: | GWAS were performed using both mixed linear models and FarmCPU. |
| Software: | PLINK v1.90, Beagle v5.4, CMplot, PopLDdecay, ASReml-R 4.1, rMVP |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Zhao YX, Gao GX, Zhou Y, Guo CX, Li B, El-Ashram S, Li ZL |
| Affiliation: | School of Life Science and Engineering, Foshan University, Foshan, Guangdong 528000, China; Guangxi Yangxiang Agricultural and Animal Husbandry Co, Ltd, Guigang, Guangxi 537100, China |
| Title: | Genome-wide association studies uncover genes associated with litter traits in the pig |
| Journal: | Animal : an international journal of animal bioscience, 2022, 16(12): 100672 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | FarmCPU method |
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