| QTL Map Information |
|---|
| Chromosome: | 16 |
| QTL Peak Location: | 48.04 (cM) |
| QTL Span: | 45.45-50.64 (cM)
38.3-42.8 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs81297480 |
| Peak: | rs81297382 |
| Lower, "Significant": | rs81459126 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 31.79 | | P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Five pig populations were used: White Duroc x Erhualian F2, Laiwu, Erhualian, Sutai, and Duroc x (Landrace x Yorkshire) three-way hybrid. |
| Breeds associated:
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| Design: | Pigs were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for muscle fatty acid composition. A total of 35,974 SNPs for Erhualian, 49,343 SNPs for Laiwu, and 56,216 SNPs for DLY pigs were used for analysis. Meta-analysis was performed on all five pig populations. |
| Analysis: | A linear mixed model was used. |
| Software: | PLINK, GEMMA, METAL, GenABEL in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Zhang W, Zhang J, Cui L, Ma J, Chen C, Ai H, Xie X, Li L, Xiao S, Huang L, Ren J, Yang B |
| Affiliation: | State Key Laboratory for Pig Genetic Improvement and Production Technology, Jiangxi Agricultural University, Nanchang, 330045, China |
| Title: | Genetic architecture of fatty acid composition in the longissimus dorsi muscle revealed by genome-wide association studies on diverse pig populations |
| Journal: | Genetics, Selection, Evolution : GSE, 2016, 48(1): 5 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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