maprintd

Precisely describes the map whose numerical Id in the heap is given.

Synopsis:

The maprintd command is invoked either:

• maprintd Options
• maprintd MapId

Description:

The maprintd command prints an extensive description of the map whose numerical id has been given as argument. For each data-set for which parameters have been estimated (merged using mergor), the map is described by successively giving, line per line:

1. the position of the marker in the overall map for this data set
2. the numerical Id of the marker
3. the name of the marker (truncated to a mxaimum number of characters)
4. the Haldane distance to the next marker (if any). Rays are used for RH data.
5. The cumulative distance of the marker from the beginning of the map (Haldane/Ray).
6. For genetic data, the Kosambi distance from the next marker (if any)
7. the estimated recombination ratio/breakage with the next marker
8. the two-points LOD with the next marker

Then the length of the map, the number of markers and the $\log_{10}$ and natural logarithm of the likelihood of the map are displayed.

Arguments:

• Options : -u to obtain the synopsys of the normal use, -h to print a one line description, -H to print a short help.
• MapId: the numerical id of the map in the heap.

Returns:

nothing.

Example:

CG> dsload Data/bc.cg
{1 f2 backcross 20 208 /homes/thomas/carthagene/test/Data/bc.cg}
CG> buildfw  3 3 {} 0
...
CG> maprintd 0

Map  0 : log10-likelihood =  -248.48, log-e-likelihood =  -572.16
-------:

Data Set Number  1 :

      Markers        Distance    Cumulative  Distance   Theta       2pt
Pos  Id name         Haldane     Haldane     Kosambi    (%%age)      LOD

  1   1  MS1          21.0 cM     21.0 cM     17.9 cM    17.1 %%    15.7
  2   2  MS2           6.2 cM     27.2 cM      5.8 cM     5.8 %%    33.8
  3   4  MS4           3.4 cM     30.5 cM      3.3 cM     3.3 %%    21.1
  4   5  MS5           5.5 cM     36.0 cM      5.2 cM     5.2 %%    16.3
  5   7  MS7           6.6 cM     42.6 cM      6.2 cM     6.2 %%    35.1
  6   8  MS8           2.2 cM     44.9 cM      2.2 cM     2.2 %%    40.8
  7   9  MS9           8.9 cM     53.7 cM      8.2 cM     8.1 %%    11.2
  8  11 MS11           8.9 cM     62.6 cM      8.2 cM     8.1 %%    10.9
  9  12 MS12           4.1 cM     66.7 cM      4.0 cM     4.0 %%    26.5
 10  15 MS15           4.9 cM     71.6 cM      4.7 cM     4.6 %%    26.6
 11  16 MS16          22.7 cM     94.4 cM     19.2 cM    18.3 %%    10.3
 12  18 MS18        ----------              ----------
                      94.4 cM                 84.8 cM


       12 markers, log10-likelihood =  -248.48
                   log-e-likelihood =  -572.16

CG>

See also:

• maprint (2.4.8)
• heaprintd (2.4.5)