A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
RIPK1 ENSSSCG00000001009 7:2881230-2903092    
RIPK2 location ⇒ 4:48291799-48291644   CU607036,CH242-207C2,4:48264691-48342496
(Clone quality: bE207C2 on chr=4; Num_of_Contigs=3; )
RIPK2 location ⇒ 4:48293505-48293409   CU607036,CH242-207C2,4:48264691-48342496
(Clone quality: bE207C2 on chr=4; Num_of_Contigs=3; )
RIPK2 location ⇒ 4:48369402-48369247   CU468702,CH242-241B11,4:48342497-48420087
(Clone quality: bE241B11 on chr=4; Num_of_Contigs=2; )
RIPK2 location ⇒ 4:48371096-48371000   CU468702,CH242-241B11,4:48342497-48420087
(Clone quality: bE241B11 on chr=4; Num_of_Contigs=2; )
RIPK3 ENSSSCG00000001987 7:81292128-81296185   CU019590,CH242-406B17,7:81281809-81421007
(Clone quality: bE406B17 on chr=7; Num_of_Contigs=4; )
RIPK4   ENSSSCG00000012083 13:144711552-144736093    
RIPPLY1   ENSSSCG00000012553 X:85349866-85352588   CU638669,CH242-151D17,X:85313703-85375217
(Clone quality: bE151D17 on chr=X; Num_of_Contigs=4; )
RIPPLY2   ENSSSCG00000004451 1:86623363-86628013   CU633536,CH242-13M22,1:86605932-86703945
(Clone quality: bE13M22 on chr=1; Num_of_Contigs=5; )
RIT1   ENSSSCG00000006505 4:98064217-98071673   CU151868,CH242-286M6,4:97945564-98074701
(Clone quality: bE286M6 on chr=4; Num_of_Contigs=4; )
RL10A_PIG   ENSSSCG00000001543 7:35915060-35917923   CU467978,CH242-397F5,7:35872400-35952461
(Clone quality: bE397F5 on chr=7; Num_of_Contigs=4; )
RL10A_PIG   ENSSSCG00000001543 7:35915060-35917923   CU467978,CH242-397F5,7:35872400-35952461
(Clone quality: bE397F5 on chr=7; Num_of_Contigs=4; )
RL13A_PIG   ENSSSCG00000003166 6:37975124-37979095   FP102665,CH242-289C15,6:37963305-38017162
(Clone quality: bE289C15 on chr=6; Num_of_Contigs=6; )
RL13A_PIG   ENSSSCG00000003181 6:38223686-38226501   FP102630,CH242-21M22,6:38210525-38227551
(Clone quality: bE21M22 on chr=6; Num_of_Contigs=8; )
RL14_PIG   ENSSSCG00000011272 13:20479465-20483342   CU915326,CH242-250M9,13:20426329-20483808
(Clone quality: bE250M9 on chr=13; Num_of_Contigs=6; )
RL22_PIG   ENSSSCG00000003367 6:45393152-45402719   FP102454,CH242-79J15,6:45387357-45440384
(Clone quality: bE79J15 on chr=6; Num_of_Contigs=7; )
RL31_PIG   ENSSSCG00000008170 3:49013139-49018452   CU972480,CH242-163M6,3:49000719-49038401
(Clone quality: bE163M6 on chr=3; Num_of_Contigs=6; )
RL36A_PIG   ENSSSCG00000016779 16:83873-84193   FP067395,CH242-430D5,16:81238-165661
(Clone quality: bE430D5 on chr=16; Num_of_Contigs=1; )
RL36A_PIG   ENSSSCG00000016952 16:41714390-41714710   CU915493,CH242-384B3,16:41661662-41795194
(Clone quality: bE384B3 on chr=16; Num_of_Contigs=3; )
RL36A_PIG   ENSSSCG00000005005 1:187892653-187893837   CU633502,CH242-240C20,1:187883994-187931470
(Clone quality: bE240C20 on chr=1; Num_of_Contigs=4; )
RL5_PIG   ENSSSCG00000006899 4:128491745-128589042    
RL7L_PIG   ENSSSCG00000001643 7:43595236-43602946   CU466966,CH242-356A18,7:43587335-43610764
(Clone quality: bE356A18 on chr=7; Num_of_Contigs=15; )
RL7L_PIG   ENSSSCG00000001647 7:43787527-43795237 CR956379,CH242-196P11,7:43779717-43958428
(No clone quality info on bE196P11) 		 
RLA0_PIG   ENSSSCG00000009900 14:40380802-40385791    
RLA1_PIG   ENSSSCG00000004970 1:175035819-175037999   CU638844,CH242-265J12,1:174966719-175040362
(Clone quality: bE265J12 on chr=1; Num_of_Contigs=3; )
RLA2_PIG   ENSSSCG00000012842 2:156777-158745   CU928976,CH242-144M19,2:43742-170991
(Clone quality: bE144M19 on chr=2; Num_of_Contigs=17; )
RLBP1 ENSSSCG00000001836 7:60185123-60199981   CT954218,CH242-516F10,7:60164519-60217533
(Clone quality: bE516F10 on chr=7; Num_of_Contigs=3; )
RLBP1L2   ENSSSCG00000004232 1:41171476-41236908   CU457443,CH242-310O17,1:41128318-41331024
(Clone quality: bE310O17 on chr=1; Num_of_Contigs=1; )
RLF   ENSSSCG00000003670 6:65914674-66005647 CR974432,PigE-204L22,6:65914672-66073853
(No clone quality info on bT204L22) 		 
RLIM   ENSSSCG00000012419 X:59009872-59035003   CU856210,CH242-133C8,X:58992770-59049395
(Clone quality: bE133C8 on chr=X; Num_of_Contigs=8; )
RLN ENSSSCG00000005216 1:226793353-226799612   CU861563,CH242-39E11,1:226787443-226799625
(Clone quality: bE39E11 on chr=1; Num_of_Contigs=5; )
RLN location ⇒ 1:226681009-226681216   CU302244,CH242-254J19,1:226615674-226772700
(Clone quality: bE254J19 on chr=1; Num_of_Contigs=1; )
RLN location ⇒ 1:226686744-226687252   CU302244,CH242-254J19,1:226615674-226772700
(Clone quality: bE254J19 on chr=1; Num_of_Contigs=1; )
RLN location ⇒ 1:226793881-226793373   CU861563,CH242-39E11,1:226787443-226799625
(Clone quality: bE39E11 on chr=1; Num_of_Contigs=5; )
RLN location ⇒ 1:226799612-226799405   CU861563,CH242-39E11,1:226787443-226799625
(Clone quality: bE39E11 on chr=1; Num_of_Contigs=5; )
RLN3 ENSSSCG00000001768 7:54032166-54034261   CU326382,CH242-204O9,7:54016934-54044053
(Clone quality: bE204O9 on chr=7; Num_of_Contigs=8; )
RLN3 ENSSSCG00000016820 16:17466727-17468136   CU928963,CH242-104B16,16:17462838-17505038
(Clone quality: bE104B16 on chr=16; Num_of_Contigs=4; )
RLN3 ENSSSCG00000013765 2:57015987-57018545    
RLN3 location ⇒ 2:57016053-57016180   FP016000,CH242-10C10,2:56952814-57017364
(Clone quality: bE10C10 on chr=2; Num_of_Contigs=2; )
RLN3 location ⇒ 2:57018212-57018442   FP086609,CH242-184K22,2:57017365-57071189
(Clone quality: bE184K22 on chr=2; Num_of_Contigs=6; )
RMI1   ENSSSCG00000010961 10:29832674-29834545   CU466492,CH242-473A14,10:29801163-29835911
(Clone quality: bE473A14 on chr=10; Num_of_Contigs=8; )
RMND1   ENSSSCG00000004089 1:15924855-15968565    
RMND5A   ENSSSCG00000008216 3:52871768-52906901    
RMND5B   ENSSSCG00000014033 2:69470934-69489586    
RNA-OUT   ENSSSCG00000019882 7:24061257-24061326 CU313307,CH242-264E8,7:23910600-24118818
(Clone quality: bE264E8 on chr=7; Num_of_Contigs=4; ) 		 
RNASE10   ENSSSCG00000002134 7:84828922-84831499   CT955972,CH242-231D20,7:84744010-84860439
(Clone quality: bE231D20 on chr=7; Num_of_Contigs=1; )
RNASE12   ENSSSCG00000002131 7:84777691-84778125   CT955972,CH242-231D20,7:84744010-84860439
(Clone quality: bE231D20 on chr=7; Num_of_Contigs=1; )
RNASE9   ENSSSCG00000002133 7:84803662-84804081   CT955972,CH242-231D20,7:84744010-84860439
(Clone quality: bE231D20 on chr=7; Num_of_Contigs=1; )
RNASEH2A   ENSSSCG00000013737 2:56069015-56075585   CU914382,CH242-275M24,2:56025074-56111468
(Clone quality: bE275M24 on chr=2; Num_of_Contigs=7; )
RNASEH2C   ENSSSCG00000012979 2:4961454-4963251    
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-1000, 1001-16

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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