A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
RPTN ENSSSCG00000006605 4:100987613-100990226   CU633752,CH242-217C6,4:100880762-100995133
(Clone quality: bE217C6 on chr=4; Num_of_Contigs=2; )
RPTN ENSSSCG00000006605 4:100987613-100990226   CU633752,CH242-217C6,4:100880762-100995133
(Clone quality: bE217C6 on chr=4; Num_of_Contigs=2; )
RPUSD1   ENSSSCG00000008000 3:35669221-35670982   FP016225,CH242-86N4,3:35668940-35679947
(Clone quality: bE86N4 on chr=3; Num_of_Contigs=9; )
RPUSD2   ENSSSCG00000004767 1:137152784-137153404   CU469090,CH242-416D6,1:137152356-137157526
(Clone quality: bE416D6 on chr=1; Num_of_Contigs=22; )
RPUSD3   ENSSSCG00000011555 13:55313551-55321178   CU633418,CH242-443E24,13:55295755-55326085
(Clone quality: bE443E24 on chr=13; Num_of_Contigs=9; )
RPUSD4   ENSSSCG00000015233 9:51890593-51898253   CU466237,CH242-476L1,9:51857996-51945800
(Clone quality: bE476L1 on chr=9; Num_of_Contigs=5; )
RQCD1   ENSSSCG00000016193 15:113626100-113656080   CU570813,CH242-128B23,15:113581621-113657451
(Clone quality: bE128B23 on chr=15; Num_of_Contigs=4; )
RRAGA   ENSSSCG00000005174 1:212609700-212610641   CU633206,CH242-117K11,1:212551177-212716212
(Clone quality: bE117K11 on chr=1; Num_of_Contigs=2; )
RRAGB   ENSSSCG00000012351 X:47869408-47880370   FP015846,CH242-84L16,X:47864299-47897110
(Clone quality: bE84L16 on chr=X; Num_of_Contigs=7; )
RRAGC   ENSSSCG00000003648 6:64678484-64694542 CR956385,CH242-177A17,6:64646719-64826929
(Clone quality: bE177A17 on chr=6; Num_of_Contigs=4; ) 		 
RREB1   ENSSSCG00000001021 7:4546794-4605878   CU469365,CH242-149A19,7:4528264-4656133
(Clone quality: bE149A19 on chr=7; Num_of_Contigs=3; )
RRH   ENSSSCG00000009136 8:96544378-96560624   CU463265,CH242-237G17,8:96455649-96640359
(Clone quality: bE237G17 on chr=8; Num_of_Contigs=1; )
RRM1   ENSSSCG00000014791 9:5339814-5378633    
RRM2B ENSSSCG00000006058 4:35169256-35201595   CU207279,CH242-480J8,4:35099646-35225473
(Clone quality: bE480J8 on chr=4; Num_of_Contigs=3; )
RRP12   ENSSSCG00000010514 14:113570924-113613238    
RRS1   ENSSSCG00000006214 4:70876488-70877585   CU855750,CH242-30I10,4:70739858-70897572
(Clone quality: bE30I10 on chr=4; Num_of_Contigs=1; )
RS1 ENSSSCG00000003461 6:51292349-51294220   CU972459,CH242-507K2,6:51276475-51315964
(Clone quality: bE507K2 on chr=6; Num_of_Contigs=12; )
RS1 ENSSSCG00000009870 14:38829379-38842345   CU468670,CH242-408G16,14:38815431-38894429
(Clone quality: bE408G16 on chr=14; Num_of_Contigs=3; )
RS1 location ⇒ 15:64321107-64321050   CU466543,CH242-517B13,15:64312533-64324625
(No clone quality info on )
RS1 location ⇒ 15:71716045-71716099   CU855618,CH242-92A17,15:71706737-71723011
(Clone quality: bE92A17 on chr=15; Num_of_Contigs=8; )
RS1 location ⇒ 15:80045818-80045886   CU914442,CH242-50K11,15:80017507-80060069
(Clone quality: bE50K11 on chr=15; Num_of_Contigs=3; )
RS1 location ⇒ 15:94017822-94017885   FP103022,CH242-299K15,15:94015440-94025304
(Clone quality: bE299K15 on chr=15; Num_of_Contigs=3; )
RS16_PIG   ENSSSCG00000005432 1:260356660-260357100   CU062655,CH242-136A13,1:260296272-260358215
(Clone quality: bE136A13 on chr=1; Num_of_Contigs=2; )
RS17_PIG   ENSSSCG00000001809 7:58427129-58430051   CU633195,CH242-149O21,7:58383826-58451729
(Clone quality: bE149O21 on chr=7; Num_of_Contigs=8; )
RS17_PIG   ENSSSCG00000001812 7:58632413-58635336   CU914670,CH242-39H15,7:58614395-58653852
(Clone quality: bE39H15 on chr=7; Num_of_Contigs=4; )
RS18_PIG   ENSSSCG00000001502 7:34046184-34050277 CU607018,CH242-138E20,7:33930957-34116846
(Clone quality: bE138E20 on chr=7; Num_of_Contigs=1; ) 		 
RS26_PIG   ENSSSCG00000000374 5:20352716-20354573   CU457395,CH242-13B13,5:20350971-20357915
(Clone quality: bE13B13 on chr=5; Num_of_Contigs=23; )
RS28_PIG   ENSSSCG00000013597 2:51619624-51620699   FP090904,CH242-212F1,2:51608045-51700090
(Clone quality: bE212F1 on chr=2; Num_of_Contigs=2; )
RS29_PIG   ENSSSCG00000005003 1:187870452-187872715   CU633502,CH242-240C20,1:187832890-187878221
(Clone quality: bE240C20 on chr=1; Num_of_Contigs=4; )
RS3_PIG   ENSSSCG00000014855 9:9323645-9326970   CU655994,CH242-280C8,9:9289835-9327436
(Clone quality: bE280C8 on chr=9; Num_of_Contigs=8; )
RSAD1   ENSSSCG00000017567 12:24214235-24222582   CU928099,CH242-256B20,12:24209205-24237171
(Clone quality: bE256B20 on chr=12; Num_of_Contigs=9; )
RSAD2 ENSSSCG00000008648 3:118838465-118853906    
RSAD2 location ⇒ 3:15880-15997   FP102618,CH242-1B21,3:10473-20929
(Clone quality: bE1B21 on chr=3; Num_of_Contigs=5; )
RSAD2 location ⇒ 3:27608-27717   FP102618,CH242-1B21,3:21030-75729
(Clone quality: bE1B21 on chr=3; Num_of_Contigs=5; )
RSAD2 location ⇒ 3:72072-72007   FP102618,CH242-1B21,3:21030-75729
(Clone quality: bE1B21 on chr=3; Num_of_Contigs=5; )
RSAD2 location ⇒ 3:84831-84718   FP102618,CH242-1B21,3:75830-115065
(Clone quality: bE1B21 on chr=3; Num_of_Contigs=5; )
RSBN1   ENSSSCG00000006765 4:111119496-111160490    
RSC1A1 ENSSSCG00000003461 6:51292349-51294220   CU972459,CH242-507K2,6:51276475-51315964
(Clone quality: bE507K2 on chr=6; Num_of_Contigs=12; )
RSF1   ENSSSCG00000014882 9:12009138-12178445    
RSG17   ENSSSCG00000004075 1:14275518-14305020    
RSHL1   ENSSSCG00000004264 1:46951322-46957178   CU618342,CH242-257P22,1:46951321-46957361
(Clone quality: bE257P22 on chr=1; Num_of_Contigs=19; )
RSL24D1   ENSSSCG00000004613 1:121344824-121360709    
RSPH3   ENSSSCG00000004055 1:9357724-9379703    
RSPO2   ENSSSCG00000006034 4:29418871-29582043    
RSPO3   ENSSSCG00000004218 1:37543708-37658537    
RSPO4   ENSSSCG00000007197 17:36051086-36065934    
RSPRY1   ENSSSCG00000002820 6:20076611-20111448    
RSRC2   ENSSSCG00000009791 14:30214055-30232767   CU607066,CH242-367B24,14:30213997-30241397
(Clone quality: bE367B24 on chr=14; Num_of_Contigs=23; )
RTBDN   ENSSSCG00000013738 2:56084380-56086074   CU914382,CH242-275M24,2:56025074-56111468
(Clone quality: bE275M24 on chr=2; Num_of_Contigs=7; )
RTCD1   ENSSSCG00000006865 4:122664398-122741559    
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-1000, 1001-16

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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