Pig genome annotation: A Gene Wish List

A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )

User Gene List	Genome Location (Chr.:start-end)	Fell within Finished BACs (Contig, BACname, Chr.:Start-End)	Fell within Unfinished Clones (SeqName, Chr.:Start-End)
Symbol	Owner/ Status	Ensembl Gene ID

UNC5C		location ⇒	14:77368118-77368347		CT737334,CH242-135I3,14:77326635-77536814 (Clone quality: bE135I3 on chr=14; Num_of_Contigs=1; )
UNC5C		location ⇒	14:77379027-77379417		CT737334,CH242-135I3,14:77326635-77536814 (Clone quality: bE135I3 on chr=14; Num_of_Contigs=1; )
UNC5C		location ⇒	14:77381525-77381761		CT737334,CH242-135I3,14:77326635-77536814 (Clone quality: bE135I3 on chr=14; Num_of_Contigs=1; )
UNC5C		location ⇒	14:77386419-77386689		CT737334,CH242-135I3,14:77326635-77536814 (Clone quality: bE135I3 on chr=14; Num_of_Contigs=1; )
UNC5D		ENSSSCG00000015830	15:47535092-47773203
UNC5D		location ⇒	15:47611431-47611537		CU571136,CH242-380P20,15:47571102-47632444 (Clone quality: bE380P20 on chr=15; Num_of_Contigs=5; )
UNC5D		location ⇒	15:47650833-47650998		CU571000,CH242-12C14,15:47641635-47845965 (Clone quality: bE12C14 on chr=15; Num_of_Contigs=1; )
UNC5D		location ⇒	15:47652759-47652927		CU571000,CH242-12C14,15:47641635-47845965 (Clone quality: bE12C14 on chr=15; Num_of_Contigs=1; )
UNC5D		location ⇒	15:47653801-47653983		CU571000,CH242-12C14,15:47641635-47845965 (Clone quality: bE12C14 on chr=15; Num_of_Contigs=1; )
UNC84A		ENSSSCG00000007544	3:211504-252148
UNC84B		ENSSSCG00000000094	5:5479126-5494767		CU655907,CH242-193M24,5:5459730-5514125 (Clone quality: bE193M24 on chr=5; Num_of_Contigs=6; )
UNC84B		location ⇒	5:5492584-5492757		CU655907,CH242-193M24,5:5459730-5514125 (Clone quality: bE193M24 on chr=5; Num_of_Contigs=6; )
UNC84B		location ⇒	5:5494121-5494403		CU655907,CH242-193M24,5:5459730-5514125 (Clone quality: bE193M24 on chr=5; Num_of_Contigs=6; )
UNC84B		location ⇒	5:5593827-5594000		CU896553,CH242-300P14,5:5590149-5601643 (Clone quality: bE300P14 on chr=5; Num_of_Contigs=16; )
UNC84B		location ⇒	5:5595364-5595646		CU896553,CH242-300P14,5:5590149-5601643 (Clone quality: bE300P14 on chr=5; Num_of_Contigs=16; )
UNC93A		ENSSSCG00000004019	1:2454322-2462144		CU914381,CH242-237F24,1:2450848-2462263 (Clone quality: bE237F24 on chr=1; Num_of_Contigs=7; )
UNCX		ENSSSCG00000007555	3:558314-562702
UNG		ENSSSCG00000009938	14:42025350-42036003		CT954284,CH242-241M1,14:42019840-42206297 (Clone quality: bE241M1 on chr=14; Num_of_Contigs=1; )
UNK		ENSSSCG00000017201	12:3945012-3959771
UNQ9391		ENSSSCG00000009687	14:13912140-13926877		CU469454,CH242-1A24,14:13822036-13927712 (Clone quality: bE1A24 on chr=14; Num_of_Contigs=1; )
UPAR		ENSSSCG00000003065	6:35092325-35107861
UPAR		ENSSSCG00000017300	12:13713466-13739068
UPB1		ENSSSCG00000010060	14:50674871-50703116		CU468600,CH242-236F16,14:50621163-50709737 (Clone quality: bE236F16 on chr=14; Num_of_Contigs=6; )
UPF1		ENSSSCG00000013917	2:62874525-62911277
UPF2		ENSSSCG00000011117	10:56878091-56952496
UPF3B		ENSSSCG00000012617	X:96419638-96440249
UPK1A		ENSSSCG00000002901	6:30210618-30219149		FP243365,CH242-219O7,6:30193636-30223769 (Clone quality: bE219O7 on chr=6; Num_of_Contigs=6; )
UPK1B		ENSSSCG00000011904	13:105626113-105639771		CU928643,CH242-487H9,13:105611801-105648515 (Clone quality: bE487H9 on chr=13; Num_of_Contigs=13; )
UPK2		ENSSSCG00000015100	9:44791000-44792913		CU695209,CH242-241K21,9:44763573-44853404 (Clone quality: bE241K21 on chr=9; Num_of_Contigs=5; )
UPK3A		ENSSSCG00000000015	5:725853-734685
UPRT		ENSSSCG00000012425	X:59787027-59807460	CU207410,CH242-397J5,X:59763418-59844061 (Clone quality: bE397J5 on chr=X; Num_of_Contigs=7; )
UQCR		ENSSSCG00000013436	2:46591362-46594643		CU972485,CH242-416N2,2:46568566-46699601 (Clone quality: bE416N2 on chr=2; Num_of_Contigs=2; )
UQCRB		ENSSSCG00000006091	4:40832391-40838170		CU179716,CH242-362G20,4:40816922-40838993 (Clone quality: bE362G20 on chr=4; Num_of_Contigs=8; )
UQCRB		location ⇒	4:40836932-40837097		CU179716,CH242-362G20,4:40816922-40838993 (Clone quality: bE362G20 on chr=4; Num_of_Contigs=8; )
UQCRB		location ⇒	4:40837944-40838043		CU179716,CH242-362G20,4:40816922-40838993 (Clone quality: bE362G20 on chr=4; Num_of_Contigs=8; )
UQCRB		location ⇒	4:40840363-40840626		CU179716,CH242-362G20,4:40839094-40900865 (Clone quality: bE362G20 on chr=4; Num_of_Contigs=8; )
UQCRC1		ENSSSCG00000011356	13:26201047-26211305		CU633242,CH242-208G16,13:26093504-26215489 (Clone quality: bE208G16 on chr=13; Num_of_Contigs=5; )
UQCRC2		ENSSSCG00000007843	3:21807624-21819975		CU694800,CH242-3C2,3:21807149-21832805 (Clone quality: bE3C2 on chr=3; Num_of_Contigs=12; )
UQCRFS1		ENSSSCG00000002851	6:26523467-26528297		FP245509,CH242-4C19,6:26478737-26536645 (Clone quality: bE4C19 on chr=6; Num_of_Contigs=5; )
UQCRH		ENSSSCG00000003903	6:118182207-118192668		CU694667,CH242-117A15,6:118158784-118247648 (Clone quality: bE117A15 on chr=6; Num_of_Contigs=3; )
UQCRQ		ENSSSCG00000014289	2:123096878-123098721	CU407038,CH242-18J12,2:123020435-123138962 (Clone quality: bE18J12 on chr=2; Num_of_Contigs=6; )
URB2		ENSSSCG00000010186	14:62517804-62552707
URG4		ENSSSCG00000016723	18:47441269-47455468		FP236704,CH242-239B21,18:47422837-47489456 (Clone quality: bE239B21 on chr=18; Num_of_Contigs=4; )
URKR		ENSSSCG00000003065	6:35092325-35107861
URM1		ENSSSCG00000005649	1:283432423-283495822
UROC1		ENSSSCG00000001823	7:59138137-59174466	CT868688,CH242-510G16,7:59026976-59242142 (Clone quality: bE510G16 on chr=7; Num_of_Contigs=3; )
UROD		ENSSSCG00000003922	6:119160983-119164325		FP102605,CH242-186A16,6:119120152-119190598 (Clone quality: bE186A16 on chr=6; Num_of_Contigs=3; )
UROS		ENSSSCG00000010742	14:142096399-142126035
URP2		ENSSSCG00000013041	2:6271573-6274882		CU861533,CH242-1H13,2:6266781-6274991 (Clone quality: bE1H13 on chr=2; Num_of_Contigs=14; )
URP2		location ⇒	2:6272491-6272347		CU861533,CH242-1H13,2:6266781-6274991 (Clone quality: bE1H13 on chr=2; Num_of_Contigs=14; )

User Gene List

Genome Location

(Chr.:start-end)

Fell within Finished BACs

(Contig, BACname, Chr.:Start-End)

Fell within Unfinished Clones

(SeqName, Chr.:Start-End)

Symbol

Owner/ Status

Ensembl Gene ID

UNC5C

location ⇒

14:77368118-77368347

CT737334,CH242-135I3,14:77326635-77536814
(Clone quality: bE135I3 on chr=14; Num_of_Contigs=1; )

UNC5C

location ⇒

14:77379027-77379417

CT737334,CH242-135I3,14:77326635-77536814
(Clone quality: bE135I3 on chr=14; Num_of_Contigs=1; )

UNC5C

location ⇒

14:77381525-77381761

CT737334,CH242-135I3,14:77326635-77536814
(Clone quality: bE135I3 on chr=14; Num_of_Contigs=1; )

UNC5C

location ⇒

14:77386419-77386689

CT737334,CH242-135I3,14:77326635-77536814
(Clone quality: bE135I3 on chr=14; Num_of_Contigs=1; )

UNC5D

ENSSSCG00000015830

15:47535092-47773203

UNC5D

location ⇒

15:47611431-47611537

CU571136,CH242-380P20,15:47571102-47632444
(Clone quality: bE380P20 on chr=15; Num_of_Contigs=5; )

UNC5D

location ⇒

15:47650833-47650998

CU571000,CH242-12C14,15:47641635-47845965
(Clone quality: bE12C14 on chr=15; Num_of_Contigs=1; )

UNC5D

location ⇒

15:47652759-47652927

CU571000,CH242-12C14,15:47641635-47845965
(Clone quality: bE12C14 on chr=15; Num_of_Contigs=1; )

UNC5D

location ⇒

15:47653801-47653983

CU571000,CH242-12C14,15:47641635-47845965
(Clone quality: bE12C14 on chr=15; Num_of_Contigs=1; )

UNC84A

ENSSSCG00000007544

3:211504-252148

UNC84B

ENSSSCG00000000094

5:5479126-5494767

CU655907,CH242-193M24,5:5459730-5514125
(Clone quality: bE193M24 on chr=5; Num_of_Contigs=6; )

UNC84B

location ⇒

5:5492584-5492757

CU655907,CH242-193M24,5:5459730-5514125
(Clone quality: bE193M24 on chr=5; Num_of_Contigs=6; )

UNC84B

location ⇒

5:5494121-5494403

CU655907,CH242-193M24,5:5459730-5514125
(Clone quality: bE193M24 on chr=5; Num_of_Contigs=6; )

UNC84B

location ⇒

5:5593827-5594000

CU896553,CH242-300P14,5:5590149-5601643
(Clone quality: bE300P14 on chr=5; Num_of_Contigs=16; )

UNC84B

location ⇒

5:5595364-5595646

CU896553,CH242-300P14,5:5590149-5601643
(Clone quality: bE300P14 on chr=5; Num_of_Contigs=16; )

UNC93A

ENSSSCG00000004019

1:2454322-2462144

CU914381,CH242-237F24,1:2450848-2462263
(Clone quality: bE237F24 on chr=1; Num_of_Contigs=7; )

UNCX

ENSSSCG00000007555

3:558314-562702

UNG

ENSSSCG00000009938

14:42025350-42036003

CT954284,CH242-241M1,14:42019840-42206297
(Clone quality: bE241M1 on chr=14; Num_of_Contigs=1; )

UNK

ENSSSCG00000017201

12:3945012-3959771

UNQ9391

ENSSSCG00000009687

14:13912140-13926877

CU469454,CH242-1A24,14:13822036-13927712
(Clone quality: bE1A24 on chr=14; Num_of_Contigs=1; )

UPAR

ENSSSCG00000003065

6:35092325-35107861

UPAR

ENSSSCG00000017300

12:13713466-13739068

UPB1

ENSSSCG00000010060

14:50674871-50703116

CU468600,CH242-236F16,14:50621163-50709737
(Clone quality: bE236F16 on chr=14; Num_of_Contigs=6; )

UPF1

ENSSSCG00000013917

2:62874525-62911277

UPF2

ENSSSCG00000011117

10:56878091-56952496

UPF3B

ENSSSCG00000012617

X:96419638-96440249

UPK1A

ENSSSCG00000002901

6:30210618-30219149

FP243365,CH242-219O7,6:30193636-30223769
(Clone quality: bE219O7 on chr=6; Num_of_Contigs=6; )

UPK1B

ENSSSCG00000011904

13:105626113-105639771

CU928643,CH242-487H9,13:105611801-105648515
(Clone quality: bE487H9 on chr=13; Num_of_Contigs=13; )

UPK2

ENSSSCG00000015100

9:44791000-44792913

CU695209,CH242-241K21,9:44763573-44853404
(Clone quality: bE241K21 on chr=9; Num_of_Contigs=5; )

UPK3A

ENSSSCG00000000015

5:725853-734685

UPRT

ENSSSCG00000012425

X:59787027-59807460

CU207410,CH242-397J5,X:59763418-59844061
(Clone quality: bE397J5 on chr=X; Num_of_Contigs=7; )

UQCR

ENSSSCG00000013436

2:46591362-46594643

CU972485,CH242-416N2,2:46568566-46699601
(Clone quality: bE416N2 on chr=2; Num_of_Contigs=2; )

UQCRB

ENSSSCG00000006091

4:40832391-40838170

CU179716,CH242-362G20,4:40816922-40838993
(Clone quality: bE362G20 on chr=4; Num_of_Contigs=8; )

UQCRB

location ⇒

4:40836932-40837097

CU179716,CH242-362G20,4:40816922-40838993
(Clone quality: bE362G20 on chr=4; Num_of_Contigs=8; )

UQCRB

location ⇒

4:40837944-40838043

CU179716,CH242-362G20,4:40816922-40838993
(Clone quality: bE362G20 on chr=4; Num_of_Contigs=8; )

UQCRB

location ⇒

4:40840363-40840626

CU179716,CH242-362G20,4:40839094-40900865
(Clone quality: bE362G20 on chr=4; Num_of_Contigs=8; )

UQCRC1

ENSSSCG00000011356

13:26201047-26211305

CU633242,CH242-208G16,13:26093504-26215489
(Clone quality: bE208G16 on chr=13; Num_of_Contigs=5; )

UQCRC2

ENSSSCG00000007843

3:21807624-21819975

CU694800,CH242-3C2,3:21807149-21832805
(Clone quality: bE3C2 on chr=3; Num_of_Contigs=12; )

UQCRFS1

ENSSSCG00000002851

6:26523467-26528297

FP245509,CH242-4C19,6:26478737-26536645
(Clone quality: bE4C19 on chr=6; Num_of_Contigs=5; )

UQCRH

ENSSSCG00000003903

6:118182207-118192668

CU694667,CH242-117A15,6:118158784-118247648
(Clone quality: bE117A15 on chr=6; Num_of_Contigs=3; )

UQCRQ

ENSSSCG00000014289

2:123096878-123098721

CU407038,CH242-18J12,2:123020435-123138962
(Clone quality: bE18J12 on chr=2; Num_of_Contigs=6; )

URB2

ENSSSCG00000010186

14:62517804-62552707

URG4

ENSSSCG00000016723

18:47441269-47455468

FP236704,CH242-239B21,18:47422837-47489456
(Clone quality: bE239B21 on chr=18; Num_of_Contigs=4; )

URKR

ENSSSCG00000003065

6:35092325-35107861

URM1

ENSSSCG00000005649

1:283432423-283495822

UROC1

ENSSSCG00000001823

7:59138137-59174466

CT868688,CH242-510G16,7:59026976-59242142
(Clone quality: bE510G16 on chr=7; Num_of_Contigs=3; )

UROD

ENSSSCG00000003922

6:119160983-119164325

FP102605,CH242-186A16,6:119120152-119190598
(Clone quality: bE186A16 on chr=6; Num_of_Contigs=3; )

UROS

ENSSSCG00000010742

14:142096399-142126035

URP2

ENSSSCG00000013041

2:6271573-6274882

CU861533,CH242-1H13,2:6266781-6274991
(Clone quality: bE1H13 on chr=2; Num_of_Contigs=14; )

URP2

location ⇒

2:6272491-6272347

CU861533,CH242-1H13,2:6266781-6274991
(Clone quality: bE1H13 on chr=2; Num_of_Contigs=14; )

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$version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010

Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
Search results:	Show Finished BAC Show unFinished BAC