Pig genome annotation: A Gene Wish List

A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )

User Gene List	Genome Location (Chr.:start-end)	Fell within Finished BACs (Contig, BACname, Chr.:Start-End)	Fell within Unfinished Clones (SeqName, Chr.:Start-End)
Symbol	Owner/ Status	Ensembl Gene ID

RTF1		ENSSSCG00000004747	1:136298650-136368064
RTKN		ENSSSCG00000008281	3:63124214-63131029		CU856063,CH242-70N7,3:63122986-63137576 (Clone quality: bE70N7 on chr=3; Num_of_Contigs=22; )
RTKN2		ENSSSCG00000010220	14:68281058-68281450		CU062554,CH242-327L20,14:68275429-68287416 (Clone quality: bE327L20 on chr=14; Num_of_Contigs=11; )
RTN3		ENSSSCG00000013052	2:6712666-6887861
RTN4		ENSSSCG00000008408	3:80251841-80452655
RTN4		ENSSSCG00000008409	3:80271091-80330580		CU929931,CH242-395D22,3:80258697-80332660 (Clone quality: bE395D22 on chr=3; Num_of_Contigs=4; )
RTN4		location ⇒	3:80251910-80251518		CU929931,CH242-395D22,3:80213191-80258596 (Clone quality: bE395D22 on chr=3; Num_of_Contigs=4; )
RTN4		location ⇒	3:80252499-80251967		CU929931,CH242-395D22,3:80213191-80258596 (Clone quality: bE395D22 on chr=3; Num_of_Contigs=4; )
RTN4		location ⇒	3:80435190-80434798		CU928339,CH242-293P15,3:80423997-80453099 (Clone quality: bE293P15 on chr=3; Num_of_Contigs=4; )
RTN4		location ⇒	3:80435779-80435247		CU928339,CH242-293P15,3:80423997-80453099 (Clone quality: bE293P15 on chr=3; Num_of_Contigs=4; )
RTN4IP1		ENSSSCG00000004373	1:76167565-76217355
RTN4R		ENSSSCG00000010140	14:52833566-52834987		CT737345,CH242-178J1,14:52723116-52857619 (Clone quality: bE178J1 on chr=14; Num_of_Contigs=3; )
RTN4RL1		ENSSSCG00000017823	12:45512924-45514261		CU914290,CH242-53A19,12:45441876-45568865 (Clone quality: bE53A19 on chr=12; Num_of_Contigs=6; )
RTP1		ENSSSCG00000011805	13:94331082-94333622		CU466303,CH242-512J18,13:94239314-94474859 (Clone quality: bE512J18 on chr=13; Num_of_Contigs=1; )
RTP2		ENSSSCG00000011809	13:94742590-94746403		CU466378,CH242-185B2,13:94693645-94764313 (Clone quality: bE185B2 on chr=13; Num_of_Contigs=3; )
RTP4		ENSSSCG00000011807	13:94493416-94497383		CU463929,CH242-428L5,13:94477045-94516217 (Clone quality: bE428L5 on chr=13; Num_of_Contigs=8; )
RTTN		ENSSSCG00000004879	1:159794833-159810491		CU062492,CH242-25B22,1:159783475-159817130 (Clone quality: bE25B22 on chr=1; Num_of_Contigs=4; )
RUFY1		ENSSSCG00000014023	2:68318300-68365960
RUFY2		ENSSSCG00000010239	14:74524311-74565887
RUFY4		ENSSSCG00000016182	15:113358621-113361676
RUNDC3A		ENSSSCG00000017359	12:16909566-16918923		CU468984,CH242-216D12,12:16901486-16922736 (Clone quality: bE216D12 on chr=12; Num_of_Contigs=22; )
RUNDC3B		ENSSSCG00000015388	9:86284105-86337872
RUNX1		ENSSSCG00000012051	13:140021472-140061224		CU856042,CH242-337N22,13:140017545-140077019 (Clone quality: bE337N22 on chr=13; Num_of_Contigs=4; )
RUNX1		location ⇒	13:115695965-115695888		CU633680,CH242-251F9,13:115560062-115745735 (Clone quality: bE251F9 on chr=13; Num_of_Contigs=2; )
RUNX1		location ⇒	13:25673237-25673152		CU633694,CH242-277F5,13:25598668-25748928 (Clone quality: bE277F5 on chr=13; Num_of_Contigs=2; )
RUNX1		location ⇒	13:61461173-61461110		CU633685,CH242-265M20,13:61378623-61549248 (Clone quality: bE265M20 on chr=13; Num_of_Contigs=2; )
RUNX1		location ⇒	13:62422375-62422452		CU463888,CH242-395L12,13:62401105-62455208 (Clone quality: bE395L12 on chr=13; Num_of_Contigs=9; )
RUNX1T1		ENSSSCG00000006115	4:45117043-45318025
RUNX1T1		location ⇒	4:45259355-45259568		CU467743,CH242-37E21,4:45259354-45302958 (Clone quality: bE37E21 on chr=4; Num_of_Contigs=6; )
RUNX1T1		location ⇒	4:45280741-45280995		CU467743,CH242-37E21,4:45259354-45302958 (Clone quality: bE37E21 on chr=4; Num_of_Contigs=6; )
RUNX1T1		location ⇒	4:45286229-45286430		CU467743,CH242-37E21,4:45259354-45302958 (Clone quality: bE37E21 on chr=4; Num_of_Contigs=6; )
RUNX1T1		location ⇒	4:45317312-45318018		CU467743,CH242-37E21,4:45303059-45318892 (Clone quality: bE37E21 on chr=4; Num_of_Contigs=6; )
RUNX2		ENSSSCG00000001710	7:46909057-47151844
RUSC1		ENSSSCG00000006511	4:98546822-98556632		CU469433,CH242-42F16,4:98535887-98563926 (Clone quality: bE42F16 on chr=4; Num_of_Contigs=13; )
RUSC2		ENSSSCG00000005308	1:247401374-247415295		CU062653,CH242-128J7,1:247267936-247426658 (Clone quality: bE128J7 on chr=1; Num_of_Contigs=2; )
RUVBL1		ENSSSCG00000011620	13:59739363-59777961
RUVBL2		ENSSSCG00000003152	6:37755343-37763412
RWDD1		ENSSSCG00000004446	1:86264734-86283333		CU442707,CH242-164J3,1:86234349-86418419 (Clone quality: bE164J3 on chr=1; Num_of_Contigs=1; )
RWDD2A		ENSSSCG00000004455	1:87212228-87215236		CU463150,CH242-495E4,1:87194151-87219140 (Clone quality: bE495E4 on chr=1; Num_of_Contigs=8; )
RWDD3		ENSSSCG00000006883	4:126833469-126833960		CU138572,CH242-92P14,4:126831806-126838466 (Clone quality: bE92P14 on chr=4; Num_of_Contigs=14; )
RWDD4A		ENSSSCG00000015776	15:41976036-41988883		CU694719,CH242-351H16,15:41968511-41997059 (Clone quality: bE351H16 on chr=15; Num_of_Contigs=9; )
RXFP1		ENSSSCG00000008875	8:41153045-41180992
RXFP2		ENSSSCG00000009336	11:7761245-7785610		CU463217,CH242-297E15,11:7756371-7787256 (Clone quality: bE297E15 on chr=11; Num_of_Contigs=15; )
RXFP3		ENSSSCG00000016820	16:17466727-17468136		CU928963,CH242-104B16,16:17462838-17505038 (Clone quality: bE104B16 on chr=16; Num_of_Contigs=4; )
RXFP4		ENSSSCG00000006503	4:98030467-98031588		CU151868,CH242-286M6,4:97945564-98074701 (Clone quality: bE286M6 on chr=4; Num_of_Contigs=4; )
RXRA		ENSSSCG00000005745	1:288836474-288860435
RXRB		ENSSSCG00000001474	7:29611721-29618370	CT737383,CH242-215D15,7:29573904-29764538 (Clone quality: bE215D15 on chr=7; Num_of_Contigs=3; )
RXRB		location ⇒	7:29614618-29612910	CT737383,CH242-215D15,7:29573904-29764538 (Clone quality: bE215D15 on chr=7; Num_of_Contigs=3; )
RXRG		ENSSSCG00000006328	4:88915240-88963761
RXRG		location ⇒	4:88915372-88915591		CU469086,CH242-497N7,4:88757283-88960914 (Clone quality: bE497N7 on chr=4; Num_of_Contigs=1; )

User Gene List

Genome Location

(Chr.:start-end)

Fell within Finished BACs

(Contig, BACname, Chr.:Start-End)

Fell within Unfinished Clones

(SeqName, Chr.:Start-End)

Symbol

Owner/ Status

Ensembl Gene ID

RTF1

ENSSSCG00000004747

1:136298650-136368064

RTKN

ENSSSCG00000008281

3:63124214-63131029

CU856063,CH242-70N7,3:63122986-63137576
(Clone quality: bE70N7 on chr=3; Num_of_Contigs=22; )

RTKN2

ENSSSCG00000010220

14:68281058-68281450

CU062554,CH242-327L20,14:68275429-68287416
(Clone quality: bE327L20 on chr=14; Num_of_Contigs=11; )

RTN3

ENSSSCG00000013052

2:6712666-6887861

RTN4

ENSSSCG00000008408

3:80251841-80452655

RTN4

ENSSSCG00000008409

3:80271091-80330580

CU929931,CH242-395D22,3:80258697-80332660
(Clone quality: bE395D22 on chr=3; Num_of_Contigs=4; )

RTN4

location ⇒

3:80251910-80251518

CU929931,CH242-395D22,3:80213191-80258596
(Clone quality: bE395D22 on chr=3; Num_of_Contigs=4; )

RTN4

location ⇒

3:80252499-80251967

CU929931,CH242-395D22,3:80213191-80258596
(Clone quality: bE395D22 on chr=3; Num_of_Contigs=4; )

RTN4

location ⇒

3:80435190-80434798

CU928339,CH242-293P15,3:80423997-80453099
(Clone quality: bE293P15 on chr=3; Num_of_Contigs=4; )

RTN4

location ⇒

3:80435779-80435247

CU928339,CH242-293P15,3:80423997-80453099
(Clone quality: bE293P15 on chr=3; Num_of_Contigs=4; )

RTN4IP1

ENSSSCG00000004373

1:76167565-76217355

RTN4R

ENSSSCG00000010140

14:52833566-52834987

CT737345,CH242-178J1,14:52723116-52857619
(Clone quality: bE178J1 on chr=14; Num_of_Contigs=3; )

RTN4RL1

ENSSSCG00000017823

12:45512924-45514261

CU914290,CH242-53A19,12:45441876-45568865
(Clone quality: bE53A19 on chr=12; Num_of_Contigs=6; )

RTP1

ENSSSCG00000011805

13:94331082-94333622

CU466303,CH242-512J18,13:94239314-94474859
(Clone quality: bE512J18 on chr=13; Num_of_Contigs=1; )

RTP2

ENSSSCG00000011809

13:94742590-94746403

CU466378,CH242-185B2,13:94693645-94764313
(Clone quality: bE185B2 on chr=13; Num_of_Contigs=3; )

RTP4

ENSSSCG00000011807

13:94493416-94497383

CU463929,CH242-428L5,13:94477045-94516217
(Clone quality: bE428L5 on chr=13; Num_of_Contigs=8; )

RTTN

ENSSSCG00000004879

1:159794833-159810491

CU062492,CH242-25B22,1:159783475-159817130
(Clone quality: bE25B22 on chr=1; Num_of_Contigs=4; )

RUFY1

ENSSSCG00000014023

2:68318300-68365960

RUFY2

ENSSSCG00000010239

14:74524311-74565887

RUFY4

ENSSSCG00000016182

15:113358621-113361676

RUNDC3A

ENSSSCG00000017359

12:16909566-16918923

CU468984,CH242-216D12,12:16901486-16922736
(Clone quality: bE216D12 on chr=12; Num_of_Contigs=22; )

RUNDC3B

ENSSSCG00000015388

9:86284105-86337872

RUNX1

ENSSSCG00000012051

13:140021472-140061224

CU856042,CH242-337N22,13:140017545-140077019
(Clone quality: bE337N22 on chr=13; Num_of_Contigs=4; )

RUNX1

location ⇒

13:115695965-115695888

CU633680,CH242-251F9,13:115560062-115745735
(Clone quality: bE251F9 on chr=13; Num_of_Contigs=2; )

RUNX1

location ⇒

13:25673237-25673152

CU633694,CH242-277F5,13:25598668-25748928
(Clone quality: bE277F5 on chr=13; Num_of_Contigs=2; )

RUNX1

location ⇒

13:61461173-61461110

CU633685,CH242-265M20,13:61378623-61549248
(Clone quality: bE265M20 on chr=13; Num_of_Contigs=2; )

RUNX1

location ⇒

13:62422375-62422452

CU463888,CH242-395L12,13:62401105-62455208
(Clone quality: bE395L12 on chr=13; Num_of_Contigs=9; )

RUNX1T1

ENSSSCG00000006115

4:45117043-45318025

RUNX1T1

location ⇒

4:45259355-45259568

CU467743,CH242-37E21,4:45259354-45302958
(Clone quality: bE37E21 on chr=4; Num_of_Contigs=6; )

RUNX1T1

location ⇒

4:45280741-45280995

CU467743,CH242-37E21,4:45259354-45302958
(Clone quality: bE37E21 on chr=4; Num_of_Contigs=6; )

RUNX1T1

location ⇒

4:45286229-45286430

CU467743,CH242-37E21,4:45259354-45302958
(Clone quality: bE37E21 on chr=4; Num_of_Contigs=6; )

RUNX1T1

location ⇒

4:45317312-45318018

CU467743,CH242-37E21,4:45303059-45318892
(Clone quality: bE37E21 on chr=4; Num_of_Contigs=6; )

RUNX2

ENSSSCG00000001710

7:46909057-47151844

RUSC1

ENSSSCG00000006511

4:98546822-98556632

CU469433,CH242-42F16,4:98535887-98563926
(Clone quality: bE42F16 on chr=4; Num_of_Contigs=13; )

RUSC2

ENSSSCG00000005308

1:247401374-247415295

CU062653,CH242-128J7,1:247267936-247426658
(Clone quality: bE128J7 on chr=1; Num_of_Contigs=2; )

RUVBL1

ENSSSCG00000011620

13:59739363-59777961

RUVBL2

ENSSSCG00000003152

6:37755343-37763412

RWDD1

ENSSSCG00000004446

1:86264734-86283333

CU442707,CH242-164J3,1:86234349-86418419
(Clone quality: bE164J3 on chr=1; Num_of_Contigs=1; )

RWDD2A

ENSSSCG00000004455

1:87212228-87215236

CU463150,CH242-495E4,1:87194151-87219140
(Clone quality: bE495E4 on chr=1; Num_of_Contigs=8; )

RWDD3

ENSSSCG00000006883

4:126833469-126833960

CU138572,CH242-92P14,4:126831806-126838466
(Clone quality: bE92P14 on chr=4; Num_of_Contigs=14; )

RWDD4A

ENSSSCG00000015776

15:41976036-41988883

CU694719,CH242-351H16,15:41968511-41997059
(Clone quality: bE351H16 on chr=15; Num_of_Contigs=9; )

RXFP1

ENSSSCG00000008875

8:41153045-41180992

RXFP2

ENSSSCG00000009336

11:7761245-7785610

CU463217,CH242-297E15,11:7756371-7787256
(Clone quality: bE297E15 on chr=11; Num_of_Contigs=15; )

RXFP3

ENSSSCG00000016820

16:17466727-17468136

CU928963,CH242-104B16,16:17462838-17505038
(Clone quality: bE104B16 on chr=16; Num_of_Contigs=4; )

RXFP4

ENSSSCG00000006503

4:98030467-98031588

CU151868,CH242-286M6,4:97945564-98074701
(Clone quality: bE286M6 on chr=4; Num_of_Contigs=4; )

RXRA

ENSSSCG00000005745

1:288836474-288860435

RXRB

ENSSSCG00000001474

7:29611721-29618370

CT737383,CH242-215D15,7:29573904-29764538
(Clone quality: bE215D15 on chr=7; Num_of_Contigs=3; )

RXRB

location ⇒

7:29614618-29612910

CT737383,CH242-215D15,7:29573904-29764538
(Clone quality: bE215D15 on chr=7; Num_of_Contigs=3; )

RXRG

ENSSSCG00000006328

4:88915240-88963761

RXRG

location ⇒

4:88915372-88915591

CU469086,CH242-497N7,4:88757283-88960914
(Clone quality: bE497N7 on chr=4; Num_of_Contigs=1; )

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$version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010

Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
Search results:	Show Finished BAC Show unFinished BAC