A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
RB1 location ⇒ 11:18642763-18642712   CU406986,CH242-455N14,11:18618991-18709564
(Clone quality: bE455N14 on chr=11; Num_of_Contigs=2; )
RB1 location ⇒ 11:18702784-18702587   CU406986,CH242-455N14,11:18618991-18709564
(Clone quality: bE455N14 on chr=11; Num_of_Contigs=2; )
RB1 location ⇒ 11:18704174-18704117   CU406986,CH242-455N14,11:18618991-18709564
(Clone quality: bE455N14 on chr=11; Num_of_Contigs=2; )
RB1CC1 location ⇒ 14:10048608-10048953   CU407039,CH242-194E12,14:10030827-10117727
(Clone quality: bE194E12 on chr=14; Num_of_Contigs=10; )
RB1CC1 location ⇒ 14:10049019-10049122   CU407039,CH242-194E12,14:10030827-10117727
(Clone quality: bE194E12 on chr=14; Num_of_Contigs=10; )
RBAK   ENSSSCG00000008668 3:123177420-123182440   CU928892,CH242-195P11,3:123165857-123192879
(Clone quality: bE195P11 on chr=3; Num_of_Contigs=6; )
RBBP5   ENSSSCG00000015288 9:63137457-63173374    
RBBP6   ENSSSCG00000007830 3:20255539-20289223    
RBBP7   ENSSSCG00000012149 X:12774586-12798342   CU463287,CH242-124N9,X:12731155-12802306
(Clone quality: bE124N9 on chr=X; Num_of_Contigs=6; )
RBBP8 ENSSSCG00000004235 1:41392765-41394450   CU041256,CH242-24I4,1:41352453-41403538
(Clone quality: bE24I4 on chr=1; Num_of_Contigs=7; )
RBBP9   ENSSSCG00000007096 17:27484658-27492144   FP102111,CH242-215E20,17:27480604-27539203
(Clone quality: bE215E20 on chr=17; Num_of_Contigs=2; )
RBCK1   ENSSSCG00000007206 17:36644992-36647985   CU856069,CH242-8P23,17:36639263-36650403
(Clone quality: bE8P23 on chr=17; Num_of_Contigs=20; )
RBKS   ENSSSCG00000008543 3:104106074-104110931    
RBL1 ENSSSCG00000007329 17:42552361-42564037    
RBM10   ENSSSCG00000012271 X:41800482-41973581    
RBM11   ENSSSCG00000012005 13:128852379-128861399   CT956011,CH242-1N22,13:128844066-128864315
(Clone quality: bE1N22 on chr=13; Num_of_Contigs=2; )
RBM12B   ENSSSCG00000006110 4:43648666-43651623   CU633952,CH242-373D19,4:43639912-43664355
(Clone quality: bE373D19 on chr=4; Num_of_Contigs=6; )
RBM14   ENSSSCG00000012937 2:4183174-4184600    
RBM15   ENSSSCG00000006809 4:114230643-114237676    
RBM15B   ENSSSCG00000011420 13:28518381-28521137   CU633548,CH242-178K10,13:28496828-28528245
(Clone quality: bE178K10 on chr=13; Num_of_Contigs=3; )
RBM16   ENSSSCG00000004070 1:12971397-13016929    
RBM17   ENSSSCG00000011134 10:61258154-61280007    
RBM18   ENSSSCG00000005531 1:276104838-276126038   CU041257,CH242-395C13,1:276094700-276166880
(Clone quality: bE395C13 on chr=1; Num_of_Contigs=10; )
RBM19 ENSSSCG00000009868 14:38482035-38601479   CT971483,CH242-195J23,14:38466129-38644502
(Clone quality: bE195J23 on chr=14; Num_of_Contigs=1; )
RBM19 location ⇒ 14:38495247-38495314   CT971483,CH242-195J23,14:38466129-38644502
(Clone quality: bE195J23 on chr=14; Num_of_Contigs=1; )
RBM19 location ⇒ 14:38514284-38514345   CT971483,CH242-195J23,14:38466129-38644502
(Clone quality: bE195J23 on chr=14; Num_of_Contigs=1; )
RBM19 location ⇒ 14:38517847-38517916   CT971483,CH242-195J23,14:38466129-38644502
(Clone quality: bE195J23 on chr=14; Num_of_Contigs=1; )
RBM19 location ⇒ 14:38519843-38519898   CT971483,CH242-195J23,14:38466129-38644502
(Clone quality: bE195J23 on chr=14; Num_of_Contigs=1; )
RBM20   ENSSSCG00000010626 14:126813654-126868038   CU463946,CH242-516C18,14:126813414-126893557
(Clone quality: bE516C18 on chr=14; Num_of_Contigs=5; )
RBM24 ENSSSCG00000001066 7:13566345-13576872   CU466948,CH242-496M15,7:13546936-13594180
(Clone quality: bE496M15 on chr=7; Num_of_Contigs=5; )
RBM25 location ⇒ 7:104178636-104178584   CU633699,CH242-28E1,7:104167569-104340521
(Clone quality: bE28E1 on chr=7; Num_of_Contigs=2; )
RBM25 location ⇒ 7:104216166-104216113   CU633699,CH242-28E1,7:104167569-104340521
(Clone quality: bE28E1 on chr=7; Num_of_Contigs=2; )
RBM25 location ⇒ 7:104404271-104404324   CU855510,CH242-242O15,7:104394393-104452846
(Clone quality: bE242O15 on chr=7; Num_of_Contigs=12; )
RBM25 location ⇒ 7:104441802-104441854   CU855510,CH242-242O15,7:104394393-104452846
(Clone quality: bE242O15 on chr=7; Num_of_Contigs=12; )
RBM26 ENSSSCG00000009479 11:50367604-50417101   CT967301,CH242-417D9,11:50326119-50422645
(Clone quality: bE417D9 on chr=11; Num_of_Contigs=1; )
RBM26 location ⇒ 11:50368450-50367740   CT967301,CH242-417D9,11:50326119-50422645
(Clone quality: bE417D9 on chr=11; Num_of_Contigs=1; )
RBM26 location ⇒ 11:50381623-50381421   CT967301,CH242-417D9,11:50326119-50422645
(Clone quality: bE417D9 on chr=11; Num_of_Contigs=1; )
RBM26 location ⇒ 11:50386602-50386433   CT967301,CH242-417D9,11:50326119-50422645
(Clone quality: bE417D9 on chr=11; Num_of_Contigs=1; )
RBM26 location ⇒ 11:50397999-50397829   CT967301,CH242-417D9,11:50326119-50422645
(Clone quality: bE417D9 on chr=11; Num_of_Contigs=1; )
RBM27   ENSSSCG00000014414 2:133854422-133876478   FP236569,CH242-244C12,2:133848488-133885171
(Clone quality: bE244C12 on chr=2; Num_of_Contigs=5; )
RBM33   ENSSSCG00000016417 18:1791692-1895713    
RBM34   ENSSSCG00000010157 14:57292197-57312604    
RBM38   ENSSSCG00000007504 17:60318569-60332107 CR956362,CH242-98D1,17:60206269-60416771
(No clone quality info on bE98D1) 		 
RBM39   ENSSSCG00000007309 17:41167521-41198918 CU210870,CH242-280N7,17:41118159-41273708
(Clone quality: bE280N7 on chr=17; Num_of_Contigs=1; ) 		 
RBM4 ENSSSCG00000012938 2:4185646-4191066   CU928093,CH242-168G1,2:4184696-4195463
(Clone quality: bE168G1 on chr=2; Num_of_Contigs=25; )
RBM41   ENSSSCG00000012556 X:85618801-85676131   FP015867,CH242-135I7,X:85546008-85702852
(Clone quality: bE135I7 on chr=X; Num_of_Contigs=2; )
RBM42   ENSSSCG00000002905 6:30310390-30319319    
RBM45   ENSSSCG00000015996 15:78735660-78757695   CU856244,CH242-226O23,15:78624379-78760131
(Clone quality: bE226O23 on chr=15; Num_of_Contigs=1; )
RBM46   ENSSSCG00000008994 8:63803153-63805994   CU855658,CH242-343C20,8:63718400-63840375
(Clone quality: bE343C20 on chr=8; Num_of_Contigs=1; )
RBM47 ENSSSCG00000008796 8:27077737-27091616    
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-1000, 1001-16

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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