groupmerge

Sets the current marker selection list to the list of all the markers appearing in the groups indicated.

Synopsis :

The CarthaGene groupmerge command is invoked as:

• groupmerge GrID1 GrID2...

Description :

groupmerge sets the current list of selected markers to the union of all the markers that appear in the indicated linkage groups. The groups are indicated by their group number (so-called Group ID). The command group must have been called before hand to compute these groups. This command can be useful if you know that two different groups correspond to a single chromosome in practice.

Arguments:

• GrID*: the number of the groups to merge.

Returns :

Nothing.

Example :

CG> dsload Data/rh.cg
{1 haploid RH 53 118 /home/tschiex/Dev/carthagene/doc/user/exemple/Data/rh.cg}
CG> group 0.5 3

Linkage Groups :
---------------:
LOD threshold=3.00
Distance threshold=50.00:

 Group ID : Marker ID List ...
        1 : 13 35 14
        2 : 10 18 17 16 15 11 12
        3 : 7
        4 : 6 53 52 8 51 50 9
        5 : 4 34 33 24 23 5 25
        6 : 3 32 29 31 30 28 27 26 20 19 21 22
        7 : 2 49 48 47 46 45 44 43 42 38 37 40 39 36 41
        8 : 1
8
CG> groupmerge 3 4 5

CG> mrkselget
7 6 53 52 8 51 50 9 4 34 33 24 23 5 25

See also :

• group (2.3.18)